PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G151900.1.p
Common NameGLYMA_13G151900, LOC100782443
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 204aa    MW: 21649.3 Da    PI: 4.7786
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G151900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173988255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr++  +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Glyma.13G151900.1.p 39 RYRGVRRRN-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAVAYDVAALALKG 88
                         69****888.8*********94....468***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.093996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-303998IPR001471AP2/ERF domain
PfamPF008471.4E-103988IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-213998IPR016177DNA-binding domain
SMARTSM003802.4E-3339102IPR001471AP2/ERF domain
PRINTSPR003674.2E-84051IPR001471AP2/ERF domain
CDDcd000189.02E-324098No hitNo description
PRINTSPR003674.2E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MASLNCLPIP LSTQIFTHIG TMYSGNATSS SRGSSESGRY RGVRRRNSGK WVSEIREPKK  60
PNRIWLGTFP TPEMAAVAYD VAALALKGKD AGLNFPDSAS SLPVPASLSA RDIQVAAAAA  120
AAAAGAAKDS MRTQTGNYNI SEGQENPTGM GNQFVDEDLI FDMPNVLVNM AQGMLLSPPP  180
FDIGLEPNSP ENTEQETSLW NFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-144096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-144096663ATERF1
3gcc_A5e-144096663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541448.21e-149PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR03e-49ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLK7LZW21e-149K7LZW2_SOYBN; Uncharacterized protein
STRINGGLYMA13G21560.21e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-23ERF family protein